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Crystal structure of Aurora-A bound to DBL8
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.09 M NPS, 0.12M Ethylene glycol, 0.1 M Buffer system 3 pH 8.5, 37.5% Precipitant mix 4
Crystal Properties Matthews coefficient Solvent content 2.27 45.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.392 α = 90 b = 71.759 β = 90 c = 88.879 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2024-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9537 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.36 55.833 78.9 1 19.3 9.5 11954
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.54 0.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.369 55.833 11953 564 77.101 0.19 0.1866 0.195 0.2596 0.2584 42.929
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.245 -0.409 0.654
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.152 r_dihedral_angle_6_deg 11.555 r_dihedral_angle_1_deg 6.118 r_lrange_it 5.989 r_lrange_other 5.983 r_dihedral_angle_2_deg 5.284 r_scangle_it 4.135 r_scangle_other 4.134 r_mcangle_it 3.534 r_mcangle_other 3.533
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.152 r_dihedral_angle_6_deg 11.555 r_dihedral_angle_1_deg 6.118 r_lrange_it 5.989 r_lrange_other 5.983 r_dihedral_angle_2_deg 5.284 r_scangle_it 4.135 r_scangle_other 4.134 r_mcangle_it 3.534 r_mcangle_other 3.533 r_scbond_it 2.396 r_scbond_other 2.396 r_mcbond_it 2.104 r_mcbond_other 2.103 r_angle_refined_deg 1.101 r_symmetry_xyhbond_nbd_refined 0.451 r_angle_other_deg 0.384 r_nbd_refined 0.199 r_symmetry_nbd_refined 0.188 r_symmetry_nbd_other 0.183 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.139 r_nbd_other 0.133 r_dihedral_angle_other_2_deg 0.084 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.053 r_symmetry_xyhbond_nbd_other 0.023 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2472 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement xia2 data reduction DIALS data scaling MOLREP phasing STARANISO data scaling