Experiment: 9RO1

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	8S0W

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	1.8 M ammonium sulphate, 100 mM Tris (pH 7.3)

Crystal Properties
Matthews coefficient	Solvent content
2.71	54.66

Symmetry
Space Group	P 63

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293	CCD	RAYONIX MX300-HS		2022-06-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	FREE ELECTRON LASER	SACLA BEAMLINE BL2	0.954	SACLA	BL2

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1	Single crystal (SF-ROX)	fixed target

Fixed Target
Diffraction ID	Description	Sample Holding	Support Base	Motion control	Details	Sample Solvent
1	Single crystal (SF-ROX)

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1	17	100	0.935	0.16	6.1	20		212579			8.8

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	R Split (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1	1.01			0.202	1.054	1.2

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1	16.765	212404	10781	99.932	0.136	0.1347	0.1348	0.1566	0.1565	RANDOM

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

RMS Deviations
Key	Refinement Restraint Deviation
r_lrange_it	19.475
r_lrange_other	16.745
r_dihedral_angle_2_deg	16.058
r_dihedral_angle_6_deg	16.022
r_dihedral_angle_3_deg	12.312
r_mcangle_other	11.049
r_mcangle_it	11.039
r_scangle_it	10.662
r_scangle_other	10.566
r_mcbond_it	9.129

RMS Deviations
Key	Refinement Restraint Deviation
r_lrange_it	19.475
r_lrange_other	16.745
r_dihedral_angle_2_deg	16.058
r_dihedral_angle_6_deg	16.022
r_dihedral_angle_3_deg	12.312
r_mcangle_other	11.049
r_mcangle_it	11.039
r_scangle_it	10.662
r_scangle_other	10.566
r_mcbond_it	9.129
r_mcbond_other	9.125
r_scbond_it	8.135
r_scbond_other	8.054
r_dihedral_angle_1_deg	7.972
r_rigid_bond_restr	7.349
r_angle_refined_deg	1.898
r_angle_other_deg	0.69
r_symmetry_xyhbond_nbd_refined	0.25
r_nbd_refined	0.229
r_xyhbond_nbd_refined	0.223
r_symmetry_nbd_refined	0.191
r_symmetry_nbd_other	0.19
r_nbd_other	0.19
r_nbtor_refined	0.178
r_metal_ion_refined	0.144
r_chiral_restr	0.113
r_symmetry_nbtor_other	0.088
r_symmetry_metal_ion_refined	0.035
r_bond_refined_d	0.014
r_gen_planes_refined	0.01
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2554
Nucleic Acid Atoms
Solvent Atoms	484
Heterogen Atoms	50

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9RO1 | pdb_00009ro1