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Manikomycin bound to the Escherichia coli 70S ribosome
Refinement RMS Deviations Key Refinement Restraint Deviation r_lrange_it 19.41 r_lrange_other 19.409 r_dihedral_angle_3_deg 12.969 r_dihedral_angle_6_deg 12.919 r_scangle_it 12.91 r_scangle_other 12.91 r_mcangle_it 10.008 r_mcangle_other 10.008 r_scbond_it 8.319 r_scbond_other 8.319
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 19.41 r_lrange_other 19.409 r_dihedral_angle_3_deg 12.969 r_dihedral_angle_6_deg 12.919 r_scangle_it 12.91 r_scangle_other 12.91 r_mcangle_it 10.008 r_mcangle_other 10.008 r_scbond_it 8.319 r_scbond_other 8.319 r_dihedral_angle_1_deg 7.038 r_mcbond_it 6.841 r_mcbond_other 6.841 r_dihedral_angle_2_deg 6.803 r_angle_refined_deg 1.11 r_dihedral_angle_other_2_deg 0.47 r_angle_other_deg 0.368 r_nbtor_refined 0.229 r_symmetry_nbd_other 0.203 r_nbd_refined 0.171 r_xyhbond_nbd_refined 0.149 r_symmetry_xyhbond_nbd_other 0.102 r_metal_ion_refined 0.098 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.049 r_gen_planes_refined 0.012 r_bond_refined_d 0.007 r_gen_planes_other 0.001 r_bond_other_d
Sample Manikomycin bound 70S E. coli ribosome
Specimen Preparation Sample Aggregation State CELL Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 340201 Reported Resolution (Å) 2.45 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOCONTINUUM (6k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 300 Maximum Defocus (nm) 1000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 5.0.0 MODEL REFINEMENT REFMAC 5.8.0425 RECONSTRUCTION RELION 5.0.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 483608