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PLK1 SURFACE ENTROPY REDUCTION (SER) MUTANT IN COMPLEX WITH INHIBITOR BI 2536
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V5Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 sodium acetate, ammonium sulphate, MES
Crystal Properties Matthews coefficient Solvent content 2.6 52.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.515 α = 90 b = 104.497 β = 115.63 c = 71.329 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.84 42.1 91.5 0.12 10.4 3.5 16036 33.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.84 2.93 53.8 0.41 2.1 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.84 42.1 15216 817 91.06 0.22166 0.21875 0.22 0.27746 0.2775 RANDOM 58.24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.41 2.29 -1.03 -3.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.5 r_dihedral_angle_4_deg 15.572 r_dihedral_angle_3_deg 14.633 r_long_range_B_refined 6.53 r_long_range_B_other 6.528 r_dihedral_angle_1_deg 5.905 r_scangle_other 3.726 r_mcangle_other 3.646 r_mcangle_it 3.645 r_scbond_it 2.207
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.5 r_dihedral_angle_4_deg 15.572 r_dihedral_angle_3_deg 14.633 r_long_range_B_refined 6.53 r_long_range_B_other 6.528 r_dihedral_angle_1_deg 5.905 r_scangle_other 3.726 r_mcangle_other 3.646 r_mcangle_it 3.645 r_scbond_it 2.207 r_scbond_other 2.198 r_mcbond_it 2.138 r_mcbond_other 2.131 r_angle_refined_deg 1.229 r_angle_other_deg 1.031 r_chiral_restr 0.039 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4723 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 117
Software Software Software Name Purpose REFMAC refinement SCALEPACK data scaling HKL-2000 data reduction MOLREP phasing