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Crystal structure of the CtaG_D144N variant from Ruminiclostridium cellulolyticum (P2(1)-small)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9QUZ Crystal structure of CtaG from Ruminiclostridium cellulolyticum (P2(1)-small)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.2 M Potassiumphosphate, 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 1.96 37.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.61 α = 90 b = 60.28 β = 108.76 c = 54.84 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-08-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 30 97.5 0.045 13.3 3 49807
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.55 97.4 0.523 2.8 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 30 47311 2490 97.63 0.1574 0.1561 0.1557 0.1825 0.1846 RANDOM 28.436
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.1 -0.8 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.889 r_dihedral_angle_4_deg 19.141 r_dihedral_angle_3_deg 13.249 r_dihedral_angle_1_deg 6.411 r_rigid_bond_restr 1.923 r_angle_other_deg 1.41 r_angle_refined_deg 1.335 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.889 r_dihedral_angle_4_deg 19.141 r_dihedral_angle_3_deg 13.249 r_dihedral_angle_1_deg 6.411 r_rigid_bond_restr 1.923 r_angle_other_deg 1.41 r_angle_refined_deg 1.335 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2575 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XFIT data reduction pointless data scaling PHASER phasing