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Crystal structure of the CtaG_H128A variant from Ruminiclostridium cellulolyticum (P2(1)-small)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9QUZ Crystal structure of CtaG from Ruminiclostridium cellulolyticum (P2(1)-small)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 0.2 M Potassiumphosphate, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.99 38.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.78 α = 90 b = 60.74 β = 108.62 c = 54.96 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 98 0.043 14.3 3.1 22688
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 95.1 0.543 1.9 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 30 21547 1134 98.11 0.1839 0.1817 0.186 0.2264 0.2279 RANDOM 43.291
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 3.96 -1.05 -1.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.916 r_dihedral_angle_4_deg 19.464 r_dihedral_angle_3_deg 13.964 r_dihedral_angle_1_deg 5.918 r_angle_refined_deg 1.112 r_angle_other_deg 1.109 r_rigid_bond_restr 0.344 r_chiral_restr 0.041 r_bond_refined_d 0.002 r_gen_planes_refined 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.916 r_dihedral_angle_4_deg 19.464 r_dihedral_angle_3_deg 13.964 r_dihedral_angle_1_deg 5.918 r_angle_refined_deg 1.112 r_angle_other_deg 1.109 r_rigid_bond_restr 0.344 r_chiral_restr 0.041 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2562 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing