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Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 16.726 r_long_range_B_other 16.673 r_dihedral_angle_3_deg 13.434 r_scangle_other 13.105 r_mcangle_it 12.487 r_mcangle_other 12.487 r_scbond_it 8.481 r_scbond_other 8.473 r_mcbond_it 8.363 r_mcbond_other 8.363
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 16.726 r_long_range_B_other 16.673 r_dihedral_angle_3_deg 13.434 r_scangle_other 13.105 r_mcangle_it 12.487 r_mcangle_other 12.487 r_scbond_it 8.481 r_scbond_other 8.473 r_mcbond_it 8.363 r_mcbond_other 8.363 r_dihedral_angle_1_deg 7.525 r_dihedral_angle_2_deg 2.857 r_angle_refined_deg 1.137 r_angle_other_deg 0.425 r_chiral_restr 0.05 r_gen_planes_refined 0.012 r_bond_refined_d 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Cryo-EM structure of SKM-70S ribosomal stalled complex in the major state (vacant A-site, canon)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 343986 Reported Resolution (Å) 2.26 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 1.14
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 5000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO 1.9.7 MODEL REFINEMENT REFMAC 5.8.0425 RECONSTRUCTION RELION 5
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION