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Drosophila melanogaster angiotensin converting enzyme homologue, AnCE in complex with WR dipeptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5A2R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 1.2 M sodium citrate, 0.1 M HEPES pH 7.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.947 α = 90 b = 172.947 β = 90 c = 103.007 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2023-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.95 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 86.473 100 0.026 0.999 15.6 10.3 98093
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.88 0.32 0.886 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.85 86.473 98090 5129 99.999 0.156 0.1543 0.185 0.1824 31.852
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.592 -0.796 -1.592 5.163
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.971 r_dihedral_angle_3_deg 13.881 r_dihedral_angle_2_deg 9.091 r_lrange_it 7.96 r_lrange_other 7.86 r_scangle_it 6.826 r_scangle_other 6.826 r_dihedral_angle_1_deg 5.916 r_scbond_it 4.656 r_scbond_other 4.628
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.971 r_dihedral_angle_3_deg 13.881 r_dihedral_angle_2_deg 9.091 r_lrange_it 7.96 r_lrange_other 7.86 r_scangle_it 6.826 r_scangle_other 6.826 r_dihedral_angle_1_deg 5.916 r_scbond_it 4.656 r_scbond_other 4.628 r_mcangle_it 3.321 r_mcangle_other 3.32 r_mcbond_other 2.697 r_mcbond_it 2.696 r_angle_refined_deg 1.909 r_angle_other_deg 0.676 r_nbd_other 0.305 r_symmetry_nbd_refined 0.271 r_chiral_restr 0.239 r_nbd_refined 0.232 r_nbtor_refined 0.195 r_symmetry_nbd_other 0.183 r_xyhbond_nbd_refined 0.175 r_symmetry_xyhbond_nbd_refined 0.15 r_symmetry_nbtor_other 0.082 r_symmetry_xyhbond_nbd_other 0.033 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4930 Nucleic Acid Atoms Solvent Atoms 766 Heterogen Atoms 127
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing