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Drosophila melanogaster angiotensin converting enzyme homologue, AnCE in complex with RW dipeptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5A2R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 1.2 M sodium citrate, 0.1 M HEPES pH 7.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.894 α = 90 b = 172.894 β = 90 c = 103.623 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2023-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.95 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 86.45 100 0.04 0.998 10.2 10.5 91012
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 100 0.464 0.793 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.9 86.447 91008 4427 99.999 0.165 0.1635 0.1712 0.2004 0.2029 33.669
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.586 -0.793 -1.586 5.146
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.818 r_dihedral_angle_3_deg 14.088 r_dihedral_angle_2_deg 7.604 r_lrange_it 7.256 r_lrange_other 7.229 r_scangle_it 6.625 r_scangle_other 6.624 r_dihedral_angle_1_deg 5.93 r_scbond_it 4.503 r_scbond_other 4.502
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.818 r_dihedral_angle_3_deg 14.088 r_dihedral_angle_2_deg 7.604 r_lrange_it 7.256 r_lrange_other 7.229 r_scangle_it 6.625 r_scangle_other 6.624 r_dihedral_angle_1_deg 5.93 r_scbond_it 4.503 r_scbond_other 4.502 r_mcangle_it 3.28 r_mcangle_other 3.28 r_mcbond_it 2.659 r_mcbond_other 2.622 r_angle_refined_deg 1.904 r_angle_other_deg 0.662 r_nbd_other 0.284 r_nbd_refined 0.225 r_nbtor_refined 0.193 r_symmetry_nbd_other 0.181 r_symmetry_xyhbond_nbd_refined 0.165 r_xyhbond_nbd_refined 0.158 r_symmetry_nbd_refined 0.143 r_chiral_restr 0.094 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4930 Nucleic Acid Atoms Solvent Atoms 518 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing