☰ Navigation Tabs
Cryo-EM structure of alpha-synuclein filaments from Parkinson's disease with H50Q variant in SNCA
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 19.257 r_long_range_B_other 19.251 r_scangle_other 16.039 r_scbond_it 9.827 r_scbond_other 9.806 r_mcangle_it 9.335 r_mcangle_other 9.333 r_dihedral_angle_3_deg 9.169 r_mcbond_it 6.169 r_mcbond_other 6.168
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 19.257 r_long_range_B_other 19.251 r_scangle_other 16.039 r_scbond_it 9.827 r_scbond_other 9.806 r_mcangle_it 9.335 r_mcangle_other 9.333 r_dihedral_angle_3_deg 9.169 r_mcbond_it 6.169 r_mcbond_other 6.168 r_dihedral_angle_1_deg 5.515 r_angle_refined_deg 1.543 r_angle_other_deg 0.533 r_chiral_restr 0.055 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Alpha-synuclein filaments extracted from the human Parkinson's disease brain with H50Q variant in SNCA
Specimen Preparation Sample Aggregation State FILAMENT Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles 200126 Reported Resolution (Å) 2.9 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C1 Axial Rise 4.73 Angular Rotation 0.89
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION