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Endogenous Pfs230D7-8 in complex with 18F25
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 10.749 f_angle_d 1.113 f_chiral_restr 0.055 f_bond_d 0.008 f_plane_restr 0.007
Sample Endogenous Pfs230D7-8 in complex with 18F25
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details The Leica Automatic Plunge Freezer EM GP2 was used for freezing.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 137749 Reported Resolution (Å) 4.32 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (9N6U) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type OTHER Electron Dose (electrons/Å**2) 52
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2300 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 130000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC v4.6.0 IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC v4.6.0 MODEL FITTING UCSF ChimeraX 1.9 RECONSTRUCTION cryoSPARC v4.6.0 MODEL REFINEMENT PHENIX 1.21_5207
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION