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Yeast V-ATPase Vo proton channel bound to nanobody 2WVA149
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6M0R
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 5.82 f_angle_d 0.481 f_chiral_restr 0.035 f_plane_restr 0.004 f_bond_d 0.003
Sample Yeast V-ATPase Vo proton channel subcomplex bound to Nanobody 2WVA149
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details LEICA EM GP2
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 118798 Reported Resolution (Å) 3.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (6m0r) Refinement Space REAL Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type TFS FALCON 4i (4k x 4k) Electron Dose (electrons/Å**2) 50.3
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS GLACIOS Minimum Defocus (nm) 400 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 92000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version MODEL FITTING PHENIX MODEL REFINEMENT ISOLDE MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 369362