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Helical Reconstruction of DENV2 US/BID-V594/2006 tubular particles bound with J9 fab
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model SwissModel in silico model AlphaFold
Sample dengue virus type 2 bound with J9 fab Sample Components dengue virus type 2 monoclonal antibody J9
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method HELICAL Number of Particles 253 Reported Resolution (Å) 38.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C1 Axial Rise 12.83 Angular Rotation 35.83
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details Placement of Edimer and fab according to density
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 40.3
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 81000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 4.0.1 IMAGE ACQUISITION EPU MODEL FITTING UCSF Chimera 1.18 INITIAL EULER ASSIGNMENT RELION 4.0.1 FINAL EULER ASSIGNMENT RELION 4.0.1 CLASSIFICATION RELION 4.0.1 RECONSTRUCTION RELION 4.0.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE 2450