☰ Navigation Tabs
The chimeric flagellar motor complex between MotA1B1 from Paenibacillus sp. TCA20 and MotAB from E.coli, state 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 34.5 r_long_range_B_other 34.5 r_scangle_other 23.863 r_dihedral_angle_3_deg 20.496 r_dihedral_angle_2_deg 19.14 r_mcangle_it 16.592 r_mcangle_other 16.591 r_scbond_it 14.003 r_scbond_other 14.002 r_mcbond_it 10.068
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 34.5 r_long_range_B_other 34.5 r_scangle_other 23.863 r_dihedral_angle_3_deg 20.496 r_dihedral_angle_2_deg 19.14 r_mcangle_it 16.592 r_mcangle_other 16.591 r_scbond_it 14.003 r_scbond_other 14.002 r_mcbond_it 10.068 r_mcbond_other 10.067 r_dihedral_angle_1_deg 5.431 r_angle_refined_deg 1.593 r_angle_other_deg 0.536 r_chiral_restr 0.09 r_gen_planes_refined 0.008 r_bond_refined_d 0.007 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample The chimeric flagellar motor complex between MotA1B1 from Paenibacillus sp. TCA20 and MotAB from E.coli Sample Components MotA MotB1-MotB
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 96359 Reported Resolution (Å) 3.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 0.073 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 59000 Calibrated Magnification 56818 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3.8 IMAGE ACQUISITION SerialEM CTF CORRECTION cryoSPARC 3.8 MODEL FITTING Coot INITIAL EULER ASSIGNMENT cryoSPARC 3.8 FINAL EULER ASSIGNMENT cryoSPARC 3.8 CLASSIFICATION cryoSPARC 3.8 RECONSTRUCTION cryoSPARC 3.8 MODEL REFINEMENT Servalcat
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 765007