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E. coli FabF mutant -C163Q
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GFX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 0.1 M BIS-Tris, 0.2 M Magnesium chloride, 20 % w/v polyethylene glycol (PEG) 3350
Crystal Properties Matthews coefficient Solvent content 2.95 58.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.761 α = 90 b = 79.761 β = 90 c = 299.191 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2024-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL02U1 0.987 SSRF BL02U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 98.61 0.188 0.188 0.06 10.528 10.6 31093
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.83 99.09 1.053 1.053 0.334 1.811 10.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 33.27 29532 1503 98.93 0.20668 0.20384 0.2094 0.26303 0.2642 RANDOM 58.608
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 0.17 0.33 -1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.844 r_dihedral_angle_2_deg 14.441 r_long_range_B_refined 10.667 r_long_range_B_other 10.666 r_scangle_other 8.968 r_dihedral_angle_1_deg 8.64 r_mcangle_it 7.578 r_mcangle_other 7.578 r_scbond_it 6.441 r_scbond_other 6.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.844 r_dihedral_angle_2_deg 14.441 r_long_range_B_refined 10.667 r_long_range_B_other 10.666 r_scangle_other 8.968 r_dihedral_angle_1_deg 8.64 r_mcangle_it 7.578 r_mcangle_other 7.578 r_scbond_it 6.441 r_scbond_other 6.44 r_mcbond_it 5.344 r_mcbond_other 5.343 r_angle_refined_deg 2.945 r_angle_other_deg 0.976 r_chiral_restr 0.126 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_gen_planes_other 0.007 r_bond_other_d 0.002 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5989 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling HKL-2000 data reduction PHASER phasing