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Co- Carbonic Anhydrase II pH 11.0 15 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LV3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 11 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.09 41.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.275 α = 90 b = 41.415 β = 104.12 c = 72.228 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2020-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 97.2 0.06 0.064 0.024 0.991 32.6 7.5 73852
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 94.1 0.28 0.301 0.109 0.965 7.2 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.2 30 70210 3638 97.19 0.11365 0.11259 0.1217 0.13495 0.1446 RANDOM 13.572
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 -0.09 -0.17 -0.08
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 57.188 r_dihedral_angle_2_deg 35.073 r_dihedral_angle_4_deg 24.332 r_sphericity_bonded 14.225 r_dihedral_angle_3_deg 11.404 r_rigid_bond_restr 6.947 r_dihedral_angle_1_deg 6.929 r_long_range_B_refined 6.231 r_long_range_B_other 5.866 r_scangle_other 3.885
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 57.188 r_dihedral_angle_2_deg 35.073 r_dihedral_angle_4_deg 24.332 r_sphericity_bonded 14.225 r_dihedral_angle_3_deg 11.404 r_rigid_bond_restr 6.947 r_dihedral_angle_1_deg 6.929 r_long_range_B_refined 6.231 r_long_range_B_other 5.866 r_scangle_other 3.885 r_mcangle_other 3.494 r_mcangle_it 3.458 r_scbond_other 3.36 r_scbond_it 3.359 r_mcbond_it 2.917 r_mcbond_other 2.642 r_angle_refined_deg 2.38 r_angle_other_deg 1.79 r_chiral_restr 0.169 r_bond_refined_d 0.029 r_gen_planes_other 0.02 r_gen_planes_refined 0.015 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing