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Co- Carbonic Anhydrase II pH 11.0 5.0 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LV3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 11 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.09 41.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.258 α = 90 b = 41.374 β = 104.1 c = 72.361 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2020-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 96.2 0.069 0.074 0.027 0.995 25.7 7.5 73171
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 93.8 0.581 0.624 0.226 0.882 3.4 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.2 30 69536 3603 96.22 0.13111 0.12987 0.1356 0.15607 0.1615 RANDOM 15.876
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.01 -0.14 0.09
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.184 r_dihedral_angle_2_deg 36.115 r_dihedral_angle_4_deg 25.942 r_sphericity_bonded 13.23 r_dihedral_angle_3_deg 12.278 r_dihedral_angle_1_deg 6.661 r_rigid_bond_restr 6.295 r_long_range_B_refined 5.82 r_long_range_B_other 5.569 r_scangle_other 4.472
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 41.184 r_dihedral_angle_2_deg 36.115 r_dihedral_angle_4_deg 25.942 r_sphericity_bonded 13.23 r_dihedral_angle_3_deg 12.278 r_dihedral_angle_1_deg 6.661 r_rigid_bond_restr 6.295 r_long_range_B_refined 5.82 r_long_range_B_other 5.569 r_scangle_other 4.472 r_scbond_it 3.989 r_scbond_other 3.95 r_mcangle_other 2.689 r_mcangle_it 2.625 r_angle_refined_deg 2.487 r_mcbond_it 2.06 r_angle_other_deg 1.985 r_mcbond_other 1.881 r_chiral_restr 0.201 r_bond_refined_d 0.03 r_gen_planes_other 0.023 r_gen_planes_refined 0.015 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing