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Tetrameric complex (3D class 2) of the Borna disease virus 1 nucleoprotein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1N93
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 33.614 r_long_range_B_other 33.613 r_scangle_other 24.277 r_mcangle_other 18.881 r_mcangle_it 18.86 r_scbond_it 16.056 r_scbond_other 16.051 r_dihedral_angle_3_deg 13.874 r_mcbond_it 13.437 r_mcbond_other 13.434
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 33.614 r_long_range_B_other 33.613 r_scangle_other 24.277 r_mcangle_other 18.881 r_mcangle_it 18.86 r_scbond_it 16.056 r_scbond_other 16.051 r_dihedral_angle_3_deg 13.874 r_mcbond_it 13.437 r_mcbond_other 13.434 r_dihedral_angle_2_deg 9.103 r_dihedral_angle_1_deg 4.751 r_angle_refined_deg 1.625 r_angle_other_deg 0.698 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Nucleoprotein complex of the Borna disease virus 1
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 176962 Reported Resolution (Å) 2.78 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C4
Map-Model Fitting and Refinement Id 1 (1n93) Refinement Space RECIPROCAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 1600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 0.056 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Topaz IMAGE ACQUISITION SerialEM CTF CORRECTION cryoSPARC MODEL FITTING UCSF ChimeraX MODEL FITTING Coot MODEL REFINEMENT Servalcat INITIAL EULER ASSIGNMENT cryoSPARC FINAL EULER ASSIGNMENT cryoSPARC CLASSIFICATION cryoSPARC RECONSTRUCTION cryoSPARC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 10212934