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FSP1 (tetrapod ancestor) bound to FAD and NAD+ and compound 3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9IFT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.12 M diethylene glycole, 0.12 M triethylene glycole, 0.12 tetraethylene glycole, 0.12 pentaethylene glycole, 0.1 M tris (base)/bicine pH 8.5, 12.5% MPD, 12.5% PEG1000, 12.5% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.45 49.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.85 α = 90 b = 79.335 β = 99.08 c = 113.373 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2025-01-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.965460 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 43.34 93.5 0.125 0.163 0.104 0.955 4.7 2 53297
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 1.98 81.6 0.941 1.219 0.766 0.327 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.94 43.34 50743 2543 93.38 0.21763 0.21529 0.2273 0.26521 0.2703 RANDOM 28.108
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.14 -1.01 -2.85 1.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.655 r_dihedral_angle_2_deg 13.908 r_dihedral_angle_1_deg 7.415 r_long_range_B_refined 6.185 r_long_range_B_other 6.183 r_scangle_other 4.75 r_mcangle_it 3.492 r_mcangle_other 3.491 r_scbond_it 2.979 r_scbond_other 2.979
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.655 r_dihedral_angle_2_deg 13.908 r_dihedral_angle_1_deg 7.415 r_long_range_B_refined 6.185 r_long_range_B_other 6.183 r_scangle_other 4.75 r_mcangle_it 3.492 r_mcangle_other 3.491 r_scbond_it 2.979 r_scbond_other 2.979 r_mcbond_it 2.351 r_mcbond_other 2.351 r_angle_refined_deg 1.466 r_angle_other_deg 0.469 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5529 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 272
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing