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Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7NHM
Sample Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin Sample Components 50S 30S
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Blotting time 2.5 s
Blot force 5
Waiting time 30 s
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 63589 Reported Resolution (Å) 3.01 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (9I88) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) 400 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION RELION 4.0 IMAGE ACQUISITION SerialEM CTF CORRECTION RELION 4.0 MODEL FITTING UCSF Chimera 1.7 MODEL FITTING ISOLDE 1.7 MODEL FITTING Coot 0.9.8.1 MODEL FITTING PHENIX 1.20.1-4487 MODEL REFINEMENT PHENIX 1.20.1-4487 INITIAL EULER ASSIGNMENT RELION 4.0 FINAL EULER ASSIGNMENT RELION 4.0 CLASSIFICATION RELION 4.0 RECONSTRUCTION RELION 4.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 659304