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DTPAA CHIP EXPERIMENT, ID29, X,Y SPACING 50,50
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6I4C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 PEG 6K, HEPES 7.0
Crystal Properties Matthews coefficient Solvent content 2.34 47.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.6 α = 90 b = 68.8 β = 105.8 c = 75.6 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL PSI JUNGFRAU 4M 2024-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.073 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 40 100 0.069 11.3 1522 95797
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.64 0.865 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 37.68 90829 4943 99.96 0.13736 0.13613 0.1379 0.15881 0.1586 RANDOM 24.556
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.04 -0.41 0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.13 r_dihedral_angle_4_deg 19.069 r_dihedral_angle_3_deg 13.268 r_long_range_B_refined 10.502 r_long_range_B_other 10.259 r_dihedral_angle_1_deg 6.504 r_scangle_other 5.621 r_scbond_other 3.676 r_scbond_it 3.675 r_mcangle_it 2.847
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.13 r_dihedral_angle_4_deg 19.069 r_dihedral_angle_3_deg 13.268 r_long_range_B_refined 10.502 r_long_range_B_other 10.259 r_dihedral_angle_1_deg 6.504 r_scangle_other 5.621 r_scbond_other 3.676 r_scbond_it 3.675 r_mcangle_it 2.847 r_mcangle_other 2.837 r_mcbond_it 2.118 r_mcbond_other 2.082 r_angle_refined_deg 1.835 r_angle_other_deg 1.49 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5539 Nucleic Acid Atoms Solvent Atoms 602 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement CrystFEL data scaling CrystFEL data reduction PHASER phasing