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Pseudomonas aeruginosa FabF C164A in complex with N-((1-((2-hydroxy-4-methylpentanamido)methyl)cyclobutyl)methyl)-1H-pyrazole-3-carboxamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other In-house determined apo model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.24M ammonium formate and 35% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.14 42.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.679 α = 90 b = 103.811 β = 90 c = 143.318 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2023-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.8731 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.766 51.91 99.21 0.099 0.113 0.053 0.989 8.1 4.6 73113
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.8 93.9 1.276 1.471 0.713 0.28 0.7 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.766 51.905 73087 3737 99.151 0.184 0.1818 0.1839 0.2222 0.2205 33.684
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.689 1.325 -0.637
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.772 r_dihedral_angle_3_deg 13.066 r_dihedral_angle_2_deg 9.27 r_dihedral_angle_1_deg 7.371 r_lrange_it 6.905 r_lrange_other 6.862 r_scangle_it 5.838 r_scangle_other 5.838 r_scbond_it 4.114 r_scbond_other 4.114
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.772 r_dihedral_angle_3_deg 13.066 r_dihedral_angle_2_deg 9.27 r_dihedral_angle_1_deg 7.371 r_lrange_it 6.905 r_lrange_other 6.862 r_scangle_it 5.838 r_scangle_other 5.838 r_scbond_it 4.114 r_scbond_other 4.114 r_mcangle_it 3.385 r_mcangle_other 3.385 r_mcbond_it 2.708 r_mcbond_other 2.707 r_angle_refined_deg 1.976 r_dihedral_angle_other_2_deg 1.787 r_angle_other_deg 1.035 r_nbd_refined 0.179 r_nbtor_refined 0.147 r_symmetry_nbd_other 0.145 r_chiral_restr 0.114 r_nbd_other 0.114 r_xyhbond_nbd_refined 0.107 r_symmetry_xyhbond_nbd_refined 0.101 r_symmetry_nbtor_other 0.066 r_ncsr_local_group_1 0.056 r_symmetry_nbd_refined 0.055 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.005 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6032 Nucleic Acid Atoms Solvent Atoms 345 Heterogen Atoms 124
Software Software Software Name Purpose REFMAC refinement xia2 data reduction DIALS data scaling PHASER phasing