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CryoEM structure of essential Mycoplasma pneumoniae lipoprotein Mpn444
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Sample Essential Mycoplasma pneumoniae lipoprotein Mpn444
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 156400 Reported Resolution (Å) 3.04 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOCONTINUUM (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 3500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.5.3. IMAGE ACQUISITION SerialEM 4.1.0beta CTF CORRECTION cryoSPARC 4.5.3. MODEL FITTING PHENIX 1.21.1-5286 MODEL FITTING Coot 0.98 INITIAL EULER ASSIGNMENT cryoSPARC 4.5.3. FINAL EULER ASSIGNMENT cryoSPARC 4.5.3. CLASSIFICATION cryoSPARC 4.5.3. RECONSTRUCTION cryoSPARC 4.5.3. MODEL REFINEMENT PHENIX 1.21.1-5286
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 5832694