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CryoEM structure of the human INO80 core-nucleosome complex state N-6
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 58.818 r_long_range_B_refined 58.815 r_scangle_other 52.906 r_mcangle_it 37.316 r_mcangle_other 37.316 r_scbond_it 35.147 r_scbond_other 35.141 r_mcbond_it 26.542 r_mcbond_other 26.541 r_dihedral_angle_3_deg 13.872
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_other 58.818 r_long_range_B_refined 58.815 r_scangle_other 52.906 r_mcangle_it 37.316 r_mcangle_other 37.316 r_scbond_it 35.147 r_scbond_other 35.141 r_mcbond_it 26.542 r_mcbond_other 26.541 r_dihedral_angle_3_deg 13.872 r_dihedral_angle_1_deg 8.372 r_dihedral_angle_2_deg 8.223 r_angle_refined_deg 2.114 r_angle_other_deg 0.715 r_chiral_restr 0.11 r_bond_refined_d 0.012 r_gen_planes_refined 0.009 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample CryoEM structure of the human INO80 core-nucleosome complex state N-6 Sample Components Histone Octamer Synthetic deoxyribonucleic acid
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 82269 Reported Resolution (Å) 3.47 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol FLEXIBLE FIT Refinement Target MAXIMUM LIKELIHOOD WITH PHASES Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 1.029
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 1100 Maximum Defocus (nm) 2900 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.5.3 CTF CORRECTION cryoSPARC 4.5.3 MODEL FITTING Coot 0.9.8.93 MODEL FITTING ISOLDE 1.8 MODEL REFINEMENT REFMAC 5.8.0425 INITIAL EULER ASSIGNMENT RELION 4.0 FINAL EULER ASSIGNMENT RELION 4.0 RECONSTRUCTION cryoSPARC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION Minimum particle diameter (A) = 120
Maximum particle diameter (A) = 240