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Coxsackievirus A9 bound with compound 18 (CL304)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8AT5
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 3.961 f_angle_d 0.452 f_chiral_restr 0.042 f_bond_d 0.004 f_plane_restr 0.003
Sample Human coxsackievirus A9 (strain Griggs)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE Sample Vitrification Details Sample was incubated for 15 s on the grid before blotted from the front for 1.5 s.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 22815 Reported Resolution (Å) 2.64 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (8AT5) Refinement Space Refinement Protocol Refinement Target Overall B Value 132.1 Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) 600 Maximum Defocus (nm) 2300 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 150000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.3.0 IMAGE ACQUISITION EPU 2.11.0.2354REL CTF CORRECTION cryoSPARC 4.3.0 MODEL FITTING UCSF ChimeraX 1.5 MODEL FITTING Coot 0.9.8.1 INITIAL EULER ASSIGNMENT cryoSPARC 4.3.0 FINAL EULER ASSIGNMENT cryoSPARC 4.3.0 CLASSIFICATION cryoSPARC 4.3.0 RECONSTRUCTION cryoSPARC 4.3.0 MODEL REFINEMENT PHENIX 1.20.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 26019