9FE0

Crystal Structure of reduced NuoEF variant R66G(NuoF) from Aquifex aeolicus bound to NAD+

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.3	281	100 mM BisTris pH 6.3, 1.4 M ammonium sulfate, 100 mM NaCl

Crystal Properties
Matthews coefficient	Solvent content
2.63	53.25

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 63.527	α = 90
b = 116.5	β = 90
c = 190.823	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2021-04-14	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-2	0.8731	ESRF	ID23-2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.2	48.2	99.9	0.07	0.996	7.9	9.7		72750

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.2	2.25			0.42	0.806

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	2.2	48.197	72673	3621	99.816	0.188	0.1859	0.2286	Rfree flags were transferred from scaled data of isomorphous structure 9FDJ	29.152

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.408			2.553		-1.145

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	13.69
r_dihedral_angle_other_3_deg	12.306
r_dihedral_angle_3_deg	12.28
r_dihedral_angle_2_deg	6.382
r_dihedral_angle_1_deg	6.304
r_lrange_it	4.442
r_lrange_other	4.353
r_scangle_it	1.421
r_scangle_other	1.304
r_angle_refined_deg	1.284
r_mcangle_it	0.896
r_mcangle_other	0.896
r_scbond_it	0.866
r_scbond_other	0.762
r_mcbond_it	0.533
r_mcbond_other	0.533
r_angle_other_deg	0.442
r_symmetry_nbd_refined	0.25
r_nbd_refined	0.205
r_symmetry_xyhbond_nbd_refined	0.196
r_symmetry_nbd_other	0.186
r_nbtor_refined	0.182
r_nbd_other	0.175
r_xyhbond_nbd_refined	0.137
r_metal_ion_refined	0.12
r_symmetry_nbtor_other	0.073
r_chiral_restr	0.064
r_symmetry_xyhbond_nbd_other	0.008
r_bond_refined_d	0.004
r_dihedral_angle_other_2_deg	0.004
r_gen_planes_refined	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9068
Nucleic Acid Atoms
Solvent Atoms	673
Heterogen Atoms	252

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
REFMAC	phasing