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Gcase in complex with small molecule inhibitor 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M KSCN
25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.13 42.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.699 α = 90 b = 74.45 β = 102.81 c = 68.192 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 9M 2020-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 .9126 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 51.44 93.8 0.054 10.1 3 127494
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.165 1.268 65.4 0.607
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.14 51.44 127355 6555 72.09 0.15743 0.15666 0.1634 0.1724 0.1773 RANDOM 17.029
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 -0.85 0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.77 r_dihedral_angle_3_deg 13.446 r_dihedral_angle_4_deg 13.415 r_dihedral_angle_1_deg 11.098 r_long_range_B_refined 4.727 r_long_range_B_other 4.563 r_scbond_it 2.149 r_scbond_other 2.149 r_angle_refined_deg 1.596 r_mcbond_it 0.888
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.77 r_dihedral_angle_3_deg 13.446 r_dihedral_angle_4_deg 13.415 r_dihedral_angle_1_deg 11.098 r_long_range_B_refined 4.727 r_long_range_B_other 4.563 r_scbond_it 2.149 r_scbond_other 2.149 r_angle_refined_deg 1.596 r_mcbond_it 0.888 r_mcbond_other 0.888 r_angle_other_deg 0.544 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3950 Nucleic Acid Atoms Solvent Atoms 680 Heterogen Atoms 136
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing