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Gcase in complex with small molecule inhibitor 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M KSCN
25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.15 42.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.854 α = 90 b = 74.588 β = 102.54 c = 68.29 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2019-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 1.00001 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.39 66.66 92.4 0.062 11.1 3.4 67581
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.39 1.549 0.86
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.39 66.66 67581 3417 68.06 0.15546 0.1541 0.1542 0.18266 0.182 RANDOM 22.405
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -0.95 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.749 r_dihedral_angle_4_deg 15.204 r_dihedral_angle_3_deg 13.212 r_dihedral_angle_1_deg 8.791 r_long_range_B_refined 5.246 r_long_range_B_other 5.146 r_scbond_it 2.747 r_scbond_other 2.746 r_angle_refined_deg 1.524 r_mcbond_it 1.281
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.749 r_dihedral_angle_4_deg 15.204 r_dihedral_angle_3_deg 13.212 r_dihedral_angle_1_deg 8.791 r_long_range_B_refined 5.246 r_long_range_B_other 5.146 r_scbond_it 2.747 r_scbond_other 2.746 r_angle_refined_deg 1.524 r_mcbond_it 1.281 r_mcbond_other 1.281 r_angle_other_deg 0.528 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3942 Nucleic Acid Atoms Solvent Atoms 507 Heterogen Atoms 108
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing