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DARPin eGFP complex DP1 (3G190.24)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QYJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 0.1 M Na acetate pH 5.5, 10% e/v PEG 8K, 10% PEG 1K, 0.2 M KBr
Crystal Properties Matthews coefficient Solvent content 2.98 58.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.039 α = 90 b = 77.039 β = 90 c = 152.473 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-01-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 40.5 99.62 0.196 0.207 0.066 0.997 7.3 9.7 20210127
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 0.91 0.415 1.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 40.46 25816 1397 99.59 0.17663 0.1741 0.1817 0.22292 0.2286 RANDOM 53.967
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.01 0.03 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.351 r_long_range_B_refined 8.654 r_long_range_B_other 8.636 r_dihedral_angle_1_deg 7.507 r_scangle_other 6.661 r_dihedral_angle_2_deg 5.28 r_scbond_it 4.229 r_scbond_other 4.228 r_mcangle_other 4.213 r_mcangle_it 4.211
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.351 r_long_range_B_refined 8.654 r_long_range_B_other 8.636 r_dihedral_angle_1_deg 7.507 r_scangle_other 6.661 r_dihedral_angle_2_deg 5.28 r_scbond_it 4.229 r_scbond_other 4.228 r_mcangle_other 4.213 r_mcangle_it 4.211 r_mcbond_it 3.014 r_mcbond_other 3.013 r_angle_refined_deg 1.402 r_angle_other_deg 0.456 r_chiral_restr 0.062 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2998 Nucleic Acid Atoms Solvent Atoms 156 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing