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VVGG(DVA)(DVA)GG, a cyclic peptide of mixed chirality
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 298 dimethylsulfoxide and water
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 17.59 α = 98.28 b = 10.36 β = 95.066 c = 4.83 γ = 100.372
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-2 0.979180 NSLS-II 17-ID-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 9.53 82.7 0.144 0.159 0.991 7.14 5.6 1113
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.15 0.469 0.53 0.885
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING FREE R-VALUE 1.101 9.528 1112 112 82.8 0.095 0.0932 0.0938 0.112 0.1132 5.379
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.551 -0.362 0.021 -0.49 0.554 -0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.759 r_rigid_bond_restr 2.406 r_dihedral_angle_3_deg 2.322 r_angle_refined_deg 1.489 r_lrange_it 1.434 r_angle_other_deg 1.221 r_mcangle_other 1.057 r_mcangle_it 1.053 r_mcbond_it 0.944 r_mcbond_other 0.817
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.759 r_rigid_bond_restr 2.406 r_dihedral_angle_3_deg 2.322 r_angle_refined_deg 1.489 r_lrange_it 1.434 r_angle_other_deg 1.221 r_mcangle_other 1.057 r_mcangle_it 1.053 r_mcbond_it 0.944 r_mcbond_other 0.817 r_scangle_other 0.618 r_scbond_it 0.541 r_scbond_other 0.52 r_scangle_it 0.438 r_xyhbond_nbd_refined 0.209 r_chiral_restr 0.096 r_nbd_refined 0.063 r_bond_other_d 0.029 r_bond_refined_d 0.012 r_symmetry_nbd_refined 0.011 r_gen_planes_refined 0.009 r_symmetry_xyhbond_nbd_refined 0.005 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 44 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling XDS data reduction SHELXT phasing