9BHN
Solution NMR structure of halichondamide A, a fused bicyclic cysteine knot undecapeptide from the marine sponge Halichondria bowerbanki
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H ROESY | 10 g/L halichondamide A | DMSO | 0 | 7.4 | 1 atm | 298.15 | Bruker AVANCE III HD 700 |
2 | 2D 1H-1H TOCSY | 10 g/L halichondamide A | DMSO | 0 | 7.4 | 1 atm | 298.15 | Bruker AVANCE III HD 700 |
3 | 2D 1H-13C HSQC | 10 g/L halichondamide A | DMSO | 0 | 7.4 | 1 atm | 298.15 | Bruker AVANCE III HD 700 |
4 | 2D 1H-15N HSQC | 10 g/L halichondamide A | DMSO | 0 | 7.4 | 1 atm | 298.15 | Bruker AVANCE III HD 700 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III HD | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
matrix relaxation | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | Sparky | Goddard | |
2 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich | |
3 | refinement | Rosetta | Baker |