☰ Navigation Tabs
CryoEM structure of monomeric quinol dependent nitric oxide reductase from Neisseria meningitidis
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 7.036 f_angle_d 0.591 f_chiral_restr 0.039 f_plane_restr 0.004 f_bond_d 0.003
Sample Monomeric quinol dependent nitric oxide reductase
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Blot foce 3, blot time 3s
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 274346 Reported Resolution (Å) 2.25 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model JEOL CRYO ARM 300 Minimum Defocus (nm) 1200 Maximum Defocus (nm) 1600 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model JEOL CRYOSPECPORTER Nominal Magnification 60000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.1.1 IMAGE ACQUISITION SerialEM CTF CORRECTION cryoSPARC 4.1.1 MODEL FITTING UCSF ChimeraX 1.4 INITIAL EULER ASSIGNMENT cryoSPARC 4.1.1 FINAL EULER ASSIGNMENT cryoSPARC 4.1.1 CLASSIFICATION cryoSPARC 4.1.1 RECONSTRUCTION cryoSPARC 4.1.1 MODEL REFINEMENT PHENIX 1.20
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION Patch based CTF 4640985 cryoSPARC blob based picking to generate 2D templates for template based picking.