8YZO

Crystal structural analysis of PaL mutant L297M

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		291	Disodium malonate 0.1 M, pH7.0 , PEG3350 15%

Crystal Properties
Matthews coefficient	Solvent content
2.27	50.87

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 81.754	α = 90
b = 104.593	β = 90
c = 62.03	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2014-10-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL17U1	0.97916	SSRF	BL17U1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.769	44.72	99.9	0.09	25	13.7		52610

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.77	1.81			0.33

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	SAD	FREE R-VALUE	1.769	44.72	52559	2590	99.753	0.136	0.1345	0.1729	16.474

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.761			-0.195		0.956

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.652
r_dihedral_angle_3_deg	12.853
r_dihedral_angle_2_deg	7.786
r_lrange_it	7.636
r_lrange_other	7.286
r_dihedral_angle_1_deg	6.417
r_scangle_it	5.327
r_scangle_other	5.326
r_scbond_it	3.664
r_scbond_other	3.664
r_mcangle_it	3.416
r_mcangle_other	3.416
r_mcbond_it	2.235
r_mcbond_other	2.235
r_angle_refined_deg	1.63
r_angle_other_deg	0.575
r_symmetry_xyhbond_nbd_refined	0.258
r_symmetry_nbd_refined	0.224
r_nbd_other	0.22
r_nbd_refined	0.216
r_xyhbond_nbd_refined	0.216
r_symmetry_nbd_other	0.195
r_nbtor_refined	0.18
r_symmetry_xyhbond_nbd_other	0.152
r_chiral_restr	0.085
r_symmetry_nbtor_other	0.082
r_bond_refined_d	0.012
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3741
Nucleic Acid Atoms
Solvent Atoms	638
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing