X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3GP0 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1M Bis-Tris pH6.5, 28% PEGMME2,000
Crystal Properties
Matthews coefficientSolvent content
2.1542.82

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.061α = 90
b = 61.86β = 90
c = 147.437γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2023-05-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-10.95374CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.349.151000.1999.37.35815
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.33.570.827

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE3.30149.15578028499.9480.2090.20540.278178.808
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.9787.254-4.276
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg11.107
r_dihedral_angle_6_deg10.801
r_lrange_it6.091
r_lrange_other6.09
r_dihedral_angle_1_deg5.281
r_mcangle_it3.606
r_mcangle_other3.606
r_scangle_it2.862
r_scangle_other2.861
r_dihedral_angle_2_deg2.609
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg11.107
r_dihedral_angle_6_deg10.801
r_lrange_it6.091
r_lrange_other6.09
r_dihedral_angle_1_deg5.281
r_mcangle_it3.606
r_mcangle_other3.606
r_scangle_it2.862
r_scangle_other2.861
r_dihedral_angle_2_deg2.609
r_mcbond_it2.049
r_mcbond_other2.048
r_scbond_it1.598
r_scbond_other1.597
r_angle_refined_deg0.685
r_angle_other_deg0.239
r_nbd_refined0.179
r_symmetry_nbd_other0.169
r_nbtor_refined0.168
r_nbd_other0.157
r_xyhbond_nbd_refined0.132
r_symmetry_nbd_refined0.12
r_symmetry_xyhbond_nbd_refined0.113
r_symmetry_nbtor_other0.072
r_chiral_restr0.032
r_bond_refined_d0.002
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2632
Nucleic Acid Atoms
Solvent Atoms26
Heterogen Atoms39

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing