8U9O

Solution structure of RsgI9 CRE domain from C. thermocellum


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N TROSY200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 8 % [U-2H] D2O93% H2O/7% D2O200 mM6.01 atm298Bruker AVANCE III HD 600
22D 1H-13C HSQC aliphatic200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 100 % [U-2H] d2o100% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
32D 1H-13C HSQC aromatic200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 100 % [U-2H] d2o100% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
42D 1H-1H TOCSY200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 100 % [U-2H] d2o100% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
52D 1H-1H COSY200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 100 % [U-2H] d2o100% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
63D HNCO200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 8 % [U-2H] D2O93% H2O/7% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
73D HN(CA)CO200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 8 % [U-2H] D2O93% H2O/7% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
83D HNCA200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 8 % [U-2H] D2O93% H2O/7% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
93D HN(COCA)CB200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 8 % [U-2H] D2O93% H2O/7% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
103D HNCACB200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 8 % [U-2H] D2O93% H2O/7% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
113D HCCH-COSY200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 100 % [U-2H] d2o100% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
123D HNHA200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 8 % [U-2H] D2O93% H2O/7% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
133D 1H-15N NOESY200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 8 % [U-2H] D2O93% H2O/7% D2O200 mM6.01 atm298Bruker AVANCE NEO 800
143D 1H-13C NOESY aliphatic200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 100 % [U-2H] d2o100% D2O200 mM6.01 atm298Bruker AVANCE III HD 600
153D 1H-13C NOESY aliphatic200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 8 % [U-2H] D2O93% H2O/7% D2O200 mM6.01 atm298Bruker AVANCE III HD 600
161H-15N heteronoe200 uM [U-13C; U-15N] RsgI9 CRE, 0.03 % sodium azide, 50 mM sodium phosphate, 200 mM sodium chloride, 8 % [U-2H] D2O93% H2O/7% D2O200 mM6.01 atm298Bruker AVANCE III HD 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD600
2BrukerAVANCE NEO800
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
2structure calculationX-PLOR NIH3.6Schwieters, Kuszewski, Tjandra and Clore
3chemical shift assignmentXipp1.21.7Daniel S. Garrett, Mengli Cai, and G. Marius Clore
4peak pickingXipp1.21.7Daniel S. Garrett, Mengli Cai, and G. Marius Clore
5chemical shift assignmentCARAKeller and Wuthrich
1collectionTopSpinBruker Biospin
6data analysisTopSpinBruker Biospin
7processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
8refinementMOLMOLKoradi, Billeter and Wuthrich
9geometry optimizationTALOS-NYang Shen and Ad Bax
10refinementPROCHECK / PROCHECK-NMRLaskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton
11peak pickingUNIOPedro Serrano, Bill Pedrini, Biswaranjan Mohanty, Michael Geralt, Torsten Herrmann, and Kurt Wuthrich
12data analysisNMRFAM-SPARKYWoonghee Lee, Marco Tonelli, and John L. Markley