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Acinetobacter baumannii 118362 family 2A cargo-loaded encapsulin shell
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6X8M
Sample Acinetobacter baumannii 118362 family 2A cargo-loaded encapsulin shell
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Blot force: 20
Blot time: 4 seconds
Drain time: 0
Wait time: 0
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 596718 Reported Resolution (Å) 1.78 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (6X8M) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target cross-correlation coefficient Overall B Value 28.96 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 54
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 1000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 105000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.2.1 IMAGE ACQUISITION Leginon CTF CORRECTION cryoSPARC 4.2.1 MODEL FITTING UCSF Chimera 1.14 INITIAL EULER ASSIGNMENT cryoSPARC 4.2.1 FINAL EULER ASSIGNMENT cryoSPARC 4.2.1 RECONSTRUCTION cryoSPARC 4.2.1 MODEL REFINEMENT Coot 0.8.9 MODEL REFINEMENT PHENIX 1.19.2-4158
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 695842