8T3N

Solution NMR structure of synthetic peptide AMPCry10Aa_5 rational designed from Cry10Aa bacterial protein


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H TOCSY1.5 mM AMPCry10Aa_5 - Peptide, 75 mM [U-99% 2H] SDS-d25, 0.05 % [U-99% 2H] DSS-d6, 90 % v/v H2O, 10 % v/v [U-99% 2H] D2O90% H2O/10% D2Oacid4.71 atm298Bruker AVANCE III 500
22D 1H-1H NOESY1.5 mM AMPCry10Aa_5 - Peptide, 75 mM [U-99% 2H] SDS-d25, 0.05 % [U-99% 2H] DSS-d6, 90 % v/v H2O, 10 % v/v [U-99% 2H] D2O90% H2O/10% D2Oacid4.71 atm298Bruker AVANCE III 500
32D 1H-13C HSQC1.5 mM AMPCry10Aa_5 - Peptide, 75 mM [U-99% 2H] SDS-d25, 0.05 % [U-99% 2H] DSS-d6, 90 % v/v H2O, 10 % v/v [U-99% 2H] D2O90% H2O/10% D2Oacid4.71 atm298Bruker AVANCE III 500
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III500
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number9
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingTopSpinBruker Biospin
2data analysisCcpNmr AnalysisCCPN
3chemical shift assignmentCcpNmr Analysis AssignCCPN
4structure calculationARIALinge, O'Donoghue and Nilges
5refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read