8SUO

BA.2/AZD1061/AZD3152 structure analysis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2930.12 M D-glucose, 0.12 M D-mannose, 0.12 M D-galactose, 0.12 M L-fructose, 0.12 M D-xylose, 0.12 M N-acetyl-D-glucosamine, 0.1 M Tris, 0.1 M bicine, pH 8.5, 40% v/v ethylene glycol, 20% w/v PEG8000
Crystal Properties
Matthews coefficientSolvent content
3.7567.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.69α = 90
b = 138β = 90
c = 188.72γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX325HE2022-09-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL14-10.97741SSRLBL14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.9894.3699.70.9999.56.736925
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.983.060.275

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entries 7L7E, 7UB0, & 7ZFF3.330.00227265137699.4560.2820.27890.332120.958
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-14.15716.325-2.168
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it16.123
r_lrange_other16.123
r_dihedral_angle_3_deg12.802
r_dihedral_angle_6_deg11.856
r_mcangle_it8.331
r_mcangle_other8.33
r_scangle_it7.357
r_scangle_other7.356
r_dihedral_angle_1_deg6.177
r_mcbond_it4.932
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it16.123
r_lrange_other16.123
r_dihedral_angle_3_deg12.802
r_dihedral_angle_6_deg11.856
r_mcangle_it8.331
r_mcangle_other8.33
r_scangle_it7.357
r_scangle_other7.356
r_dihedral_angle_1_deg6.177
r_mcbond_it4.932
r_mcbond_other4.932
r_scbond_it4.202
r_scbond_other4.202
r_dihedral_angle_2_deg3.728
r_angle_refined_deg0.777
r_angle_other_deg0.286
r_symmetry_nbd_refined0.222
r_xyhbond_nbd_refined0.204
r_symmetry_nbd_other0.202
r_nbd_other0.201
r_nbd_refined0.195
r_nbtor_refined0.176
r_symmetry_nbtor_other0.081
r_symmetry_xyhbond_nbd_other0.043
r_chiral_restr0.035
r_symmetry_xyhbond_nbd_refined0.02
r_gen_planes_refined0.003
r_bond_refined_d0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8176
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing