8S1P
YlmH bound to PtRNA-50S
ELECTRON MICROSCOPY
Refinement
| RMS Deviations | |
|---|---|
| Key | Refinement Restraint Deviation |
| r_lrange_it | 12.758 |
| r_lrange_other | 12.758 |
| r_dihedral_angle_6_deg | 12.203 |
| r_dihedral_angle_3_deg | 10.966 |
| r_dihedral_angle_1_deg | 6.541 |
| r_dihedral_angle_2_deg | 5.928 |
| r_mcangle_it | 4.703 |
| r_mcangle_other | 4.703 |
| r_scangle_it | 4.084 |
| r_scangle_other | 4.084 |
| Sample |
|---|
| 50S ribosomal subunit with stalled P-tRNA-nascent chain, bound by YlmH |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | |
| Cryogen Name | ETHANE-PROPANE |
| Sample Vitrification Details | |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 66113 |
| Reported Resolution (Å) | 1.96 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 | ||||
| Refinement Space | |||||
| Refinement Protocol | |||||
| Refinement Target | |||||
| Overall B Value | |||||
| Fitting Procedure | |||||
| Details | |||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | FEI FALCON IV (4k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 40 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | FEI TITAN KRIOS |
| Minimum Defocus (nm) | 400 |
| Maximum Defocus (nm) | 900 |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | |
| Nominal Magnification | |
| Calibrated Magnification | |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| PARTICLE SELECTION | crYOLO | 1.8.3 |
| CTF CORRECTION | RELION | 4.0.1 |
| INITIAL EULER ASSIGNMENT | RELION | 4.0.1 |
| FINAL EULER ASSIGNMENT | RELION | 4.0.1 |
| RECONSTRUCTION | RELION | 4.0.1 |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| PHASE FLIPPING AND AMPLITUDE CORRECTION | 2550984 | |||
