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A fragment-based inhibitor of SHP2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.5M K formate
15% PEG 3350
0.1M pH=8 Bis-Tris propane/HCl
Crystal Properties Matthews coefficient Solvent content 2.25 45.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.101 α = 90 b = 215.835 β = 97.05 c = 56.509 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2016-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 .92819 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 107.92 99.7 0.087 3.5 2.6 74347
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.04 0.924 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.99 107.92 70375 3751 99.73 0.20651 0.20397 0.2121 0.25397 0.2596 RANDOM 44.227
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 -0.64 0.33 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.45 r_dihedral_angle_4_deg 18.027 r_dihedral_angle_3_deg 14.958 r_dihedral_angle_1_deg 6.659 r_long_range_B_refined 6.194 r_long_range_B_other 6.169 r_scbond_it 2.6 r_scbond_other 2.6 r_mcbond_it 2.128 r_mcbond_other 2.128
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.45 r_dihedral_angle_4_deg 18.027 r_dihedral_angle_3_deg 14.958 r_dihedral_angle_1_deg 6.659 r_long_range_B_refined 6.194 r_long_range_B_other 6.169 r_scbond_it 2.6 r_scbond_other 2.6 r_mcbond_it 2.128 r_mcbond_other 2.128 r_angle_refined_deg 1.237 r_angle_other_deg 0.466 r_chiral_restr 0.061 r_bond_refined_d 0.009 r_bond_other_d 0.001 r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8131 Nucleic Acid Atoms Solvent Atoms 785 Heterogen Atoms 52
Software Software Software Name Purpose XDS data reduction Aimless data scaling BUSTER phasing REFMAC refinement