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Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.622 f_angle_d 0.352 f_chiral_restr 0.031 f_plane_restr 0.003 f_bond_d 0.002
Sample Api137 in complex with the large ribosomal subunit Sample Components Large ribosomal subunit Api137
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 424506 Reported Resolution (Å) 2.64 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 24.6
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode OTHER Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Warp CTF CORRECTION Warp MODEL FITTING Coot 0.9.8 FINAL EULER ASSIGNMENT cryoSPARC 4.21 CLASSIFICATION RELION 3.1 MODEL REFINEMENT PHENIX 1.20_4459:
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION