8RPP

Crystal structure of the JIP1-JIP2-SH3 heterodimer and the JIP2-JIP2-SH3 homodimer

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7NYK	JIP1-JIP1 SH3 dimer chain A,B

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7	293	Malonate 1.5 M

Crystal Properties
Matthews coefficient	Solvent content
2.8	50

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 68.47	α = 90
b = 68.47	β = 90
c = 177.259	γ = 120

Symmetry
Space Group	H 3

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2021-04-29	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID30B	0.96546	ESRF	ID30B

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.867	59.086	99.6	0.075	0.098	0.062	0.996	10.8	3.5		25670

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.867	1.899	100		0.55	0.644	0.332	0.76	2.7	3.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.867	59.086	25663	1283	99.577	0.15	0.1482	0.1936	23.922

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.255	0.128		0.255		-0.828

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.801
r_dihedral_angle_3_deg	13.729
r_dihedral_angle_2_deg	13.022
r_dihedral_angle_1_deg	7.896
r_lrange_it	6.931
r_lrange_other	6.905
r_scangle_it	5.392
r_scangle_other	5.39
r_scbond_it	3.478
r_scbond_other	3.476
r_mcangle_it	3.071
r_mcangle_other	3.07
r_mcbond_it	2.096
r_mcbond_other	2.096
r_angle_refined_deg	1.538
r_angle_other_deg	0.525
r_symmetry_nbd_refined	0.345
r_nbd_refined	0.222
r_symmetry_nbd_other	0.206
r_nbtor_refined	0.192
r_nbd_other	0.164
r_xyhbond_nbd_refined	0.146
r_symmetry_xyhbond_nbd_refined	0.127
r_symmetry_nbtor_other	0.091
r_chiral_restr	0.066
r_bond_refined_d	0.009
r_gen_planes_refined	0.009
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2038
Nucleic Acid Atoms
Solvent Atoms	182
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
AutoProcess	data reduction
STARANISO	data scaling
PHASER	phasing