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Unspecific peroxygenase from Marasmius wettsteinii (MweUPO-1)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FUK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 291 25% PEG 400, 100 mM sodium acetate pH 4.6, 100 mM magnesium chloride.
Crystal Properties Matthews coefficient Solvent content 2.32 46.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.574 α = 90 b = 73.574 β = 90 c = 186.671 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M KB MIRRORS 2021-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.9792 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 47.56 99.7 0.055 0.059 0.022 0.999 16.5 7.3 67994
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 98.2 0.691 0.748 0.28 0.867 2.8 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 47.56 64464 3458 99.5 0.16887 0.16733 0.1774 0.19771 0.2077 RANDOM 23.091
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 0.82 -1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.612 r_dihedral_angle_2_deg 10.26 r_dihedral_angle_1_deg 6.18 r_long_range_B_refined 4.668 r_long_range_B_other 4.668 r_scangle_other 3.665 r_mcangle_other 2.506 r_mcangle_it 2.505 r_scbond_it 2.391 r_scbond_other 2.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.612 r_dihedral_angle_2_deg 10.26 r_dihedral_angle_1_deg 6.18 r_long_range_B_refined 4.668 r_long_range_B_other 4.668 r_scangle_other 3.665 r_mcangle_other 2.506 r_mcangle_it 2.505 r_scbond_it 2.391 r_scbond_other 2.39 r_mcbond_it 1.663 r_mcbond_other 1.662 r_angle_refined_deg 1.457 r_angle_other_deg 0.824 r_chiral_restr 0.07 r_gen_planes_other 0.012 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3642 Nucleic Acid Atoms Solvent Atoms 444 Heterogen Atoms 206
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing