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CryoEM structure of mTORC1 with a paediatric kidney cancer-associated 1455-EWED-1458 duplication in mTOR, Focused on one protomer copy.
ELECTRON MICROSCOPY
Refinement
RMS Deviations
Key
Refinement Restraint Deviation
f_dihedral_angle_d
5.6791
f_angle_d
0.9863
f_chiral_restr
0.0529
f_plane_restr
0.0075
f_bond_d
0.0058
Sample
mTORC1 complex is a dimer of a heterotrimeric complex including mTOR, RAPTOR and mLST8
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
177138
Reported Resolution (Å)
3.4
Resolution Method
FSC 0.143 CUT-OFF
Other Details
This map is a focussed classification with signal subtraction of one protomer of mTORC1 dimer variant. The final reconstruction of the protomer yielde ...
This map is a focussed classification with signal subtraction of one protomer of mTORC1 dimer variant. The final reconstruction of the protomer yielded a resolution of 3.4 Angstrom.
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
Id
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
cross-correlation coefficient
Overall B Value
116.5
Fitting Procedure
Details
Initial local fitting was done in Coot and Chimera and then subjected to ROSETTA for model rebuilding. Finally, in Phenix real-space refine was perfor ...
Initial local fitting was done in Coot and Chimera and then subjected to ROSETTA for model rebuilding. Finally, in Phenix real-space refine was performed for the final model