8QX0

Ligninolytic manganese peroxidase Ape-MnP1 from Agaricales mushrooms in complex with a manganese ion

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	4.2	295	30% P2000 MME, 0,1 M sodium citrate, pH 4.2

Crystal Properties
Matthews coefficient	Solvent content
2.23	44.87

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 62.63	α = 90
b = 39.811	β = 101.5
c = 63.56	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	110	PIXEL	DECTRIS PILATUS 6M		2018-10-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97926	ALBA	XALOC

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.24	62.29	95.2	0.048	0.068	0.048	0.999	10	3.2		81601

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.24	1.27	94.9		0.497	0.7	0.493	0.539	1.7	3.2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.247	62.284	81594	4019	95.081	0.179	0.1775	0.1989	12.623

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.048		0.415	-0.581		0.424

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.801
r_dihedral_angle_3_deg	11.853
r_dihedral_angle_1_deg	5.939
r_dihedral_angle_2_deg	5.669
r_lrange_it	3.91
r_lrange_other	3.889
r_scangle_it	3.421
r_scangle_other	3.42
r_scbond_other	2.379
r_scbond_it	2.377
r_angle_refined_deg	2.059
r_mcangle_other	1.869
r_mcangle_it	1.866
r_angle_other_deg	1.362
r_mcbond_it	1.271
r_mcbond_other	1.269
r_xyhbond_nbd_refined	0.241
r_nbd_refined	0.229
r_symmetry_nbd_other	0.188
r_nbtor_refined	0.179
r_nbd_other	0.156
r_chiral_restr	0.105
r_symmetry_xyhbond_nbd_refined	0.084
r_symmetry_nbtor_other	0.079
r_metal_ion_refined	0.067
r_symmetry_nbd_refined	0.063
r_gen_planes_refined	0.015
r_bond_refined_d	0.013
r_gen_planes_other	0.013
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2450
Nucleic Acid Atoms
Solvent Atoms	179
Heterogen Atoms	73

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing