8QUQ

Crystal structure of Ompk36 GD at 3500 eV based on spherical harmonics absorption corrections

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.6	293	0.1M Lithium sulfate, 0.1M sodium citrate pH 5.6 and 12% PEG4000

Crystal Properties
Matthews coefficient	Solvent content
3.2	61.51

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 232.078	α = 90
b = 74.7	β = 112.209
c = 91.35	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	80	PIXEL	DECTRIS PILATUS 12M		2021-05-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I23	3.54	Diamond	I23

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.34	107.4	98.85	0.997	16.42	11		60662

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.34	2.42			0.896

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.34	107.4	60662	3261	98.758	0.205	0.2023	0.2437	41.487

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.225		0.43	-2.735		1.619

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.873
r_dihedral_angle_3_deg	13.356
r_lrange_it	7.972
r_lrange_other	7.968
r_dihedral_angle_2_deg	7.285
r_dihedral_angle_1_deg	6.889
r_scangle_it	6.458
r_scangle_other	6.448
r_mcangle_it	4.902
r_mcangle_other	4.902
r_scbond_it	4.242
r_scbond_other	4.235
r_mcbond_it	3.471
r_mcbond_other	3.47
r_angle_refined_deg	1.429
r_angle_other_deg	0.503
r_symmetry_xyhbond_nbd_refined	0.209
r_symmetry_nbd_other	0.201
r_nbtor_refined	0.185
r_nbd_other	0.184
r_nbd_refined	0.181
r_symmetry_nbd_refined	0.172
r_xyhbond_nbd_refined	0.158
r_symmetry_nbtor_other	0.086
r_chiral_restr	0.065
r_gen_planes_refined	0.007
r_bond_refined_d	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8099
Nucleic Acid Atoms
Solvent Atoms	198
Heterogen Atoms	30

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
DIALS	data scaling
PHASER	phasing