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wild type Pa.FabF in complex cerulenin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4B7V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 35% PEG3350, 0.24M NH4HCO2
Crystal Properties Matthews coefficient Solvent content 2.25 45.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.065 α = 90 b = 65.159 β = 102.04 c = 84.816 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2022-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.96546 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 48.91 90.2 0.84 3.08 1.72 56802
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 2.03 0.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 47.85 55667 1134 95.42 0.21893 0.21833 0.2274 0.24825 0.2589 RANDOM 26.671
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.09 1.15 -1.14 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.847 r_dihedral_angle_4_deg 15.747 r_dihedral_angle_3_deg 14.861 r_long_range_B_other 8.361 r_long_range_B_refined 8.358 r_scangle_other 7.592 r_dihedral_angle_1_deg 7.201 r_scbond_it 6.277 r_scbond_other 6.276 r_mcangle_other 4.529
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.847 r_dihedral_angle_4_deg 15.747 r_dihedral_angle_3_deg 14.861 r_long_range_B_other 8.361 r_long_range_B_refined 8.358 r_scangle_other 7.592 r_dihedral_angle_1_deg 7.201 r_scbond_it 6.277 r_scbond_other 6.276 r_mcangle_other 4.529 r_mcangle_it 4.528 r_mcbond_other 3.492 r_mcbond_it 3.491 r_angle_refined_deg 1.426 r_angle_other_deg 1.305 r_chiral_restr 0.147 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6068 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 115
Software Software Software Name Purpose REFMAC refinement XDS data reduction pointless data scaling PHASER phasing