8QBH

AntI in complex with 1-Naphthol


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.9293100 mM HEPES pH 7.9, 0.1 M NaAc pH 6.6, 24% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.1643.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.94α = 90
b = 154.73β = 90
c = 92.09γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2021-08-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.055095.80.04517.294.524440
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.052.150.6693.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.0545.6823215122195.760.192420.191640.2072RANDOM51.634
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
36.38-18.83-17.56
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.724
r_dihedral_angle_4_deg14.282
r_dihedral_angle_3_deg12.262
r_dihedral_angle_1_deg5.48
r_long_range_B_refined2.106
r_long_range_B_other2.105
r_mcangle_it1.322
r_mcangle_other1.322
r_angle_refined_deg1.14
r_scangle_other1.088
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.724
r_dihedral_angle_4_deg14.282
r_dihedral_angle_3_deg12.262
r_dihedral_angle_1_deg5.48
r_long_range_B_refined2.106
r_long_range_B_other2.105
r_mcangle_it1.322
r_mcangle_other1.322
r_angle_refined_deg1.14
r_scangle_other1.088
r_angle_other_deg1.07
r_mcbond_it0.91
r_mcbond_other0.91
r_scbond_it0.766
r_scbond_other0.765
r_rigid_bond_restr0.224
r_chiral_restr0.037
r_bond_refined_d0.002
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2993
Nucleic Acid Atoms
Solvent Atoms98
Heterogen Atoms11

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing