Experiment: 8Q2G

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		ARCIMBOLDO light

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6	293	0.2 M Ammonium sulfate, 20% w/v Polyethylene glycol 3,350 pH 6.0

Crystal Properties
Matthews coefficient	Solvent content
3.54	65.3

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 75.568	α = 90
b = 82.334	β = 90
c = 64.604	γ = 90

Symmetry
Space Group	C 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2020-01-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.1	0.9184	BESSY	14.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.49	42.174	97.4	0.99	13.04	6		10864

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.49	2.56	93.83		0.81

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.49	42.174	7026	691	95.657	0.276	0.2675	0.358	58.967

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.324			-0.36		0.036

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_4_deg	25.294
r_dihedral_angle_2_deg	24.991
r_dihedral_angle_3_deg	18.957
r_lrange_it	10.418
r_dihedral_angle_1_deg	7.56
r_scangle_it	6.229
r_mcangle_it	6.023
r_scbond_it	4.045
r_mcbond_it	3.873
r_angle_refined_deg	1.175

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_4_deg	25.294
r_dihedral_angle_2_deg	24.991
r_dihedral_angle_3_deg	18.957
r_lrange_it	10.418
r_dihedral_angle_1_deg	7.56
r_scangle_it	6.229
r_mcangle_it	6.023
r_scbond_it	4.045
r_mcbond_it	3.873
r_angle_refined_deg	1.175
r_symmetry_nbd_refined	0.392
r_nbtor_refined	0.312
r_symmetry_xyhbond_nbd_refined	0.303
r_nbd_refined	0.244
r_xyhbond_nbd_refined	0.201
r_chiral_restr	0.102
r_gen_planes_refined	0.006
r_bond_refined_d	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1005
Nucleic Acid Atoms
Solvent Atoms	46
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
Arcimboldo	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.