X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 5FL4 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.5294CRYSTALLIZATION CONDITIONS: 1.0 M DI-AMMONIUM HYDROGEN PHOSPHATE, 0.1 M SODIUM ACETATE PH 4.5, PROTEIN 9 MG/ML, 5-10 MM INHIBITOR (STOCK SOLUTION WAS 100 MM INHIBITOR DISSOLVED IN 100% DIMETHYL SULFOXIDE), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties
Matthews coefficientSolvent content
3.4163.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 152.1α = 90
b = 152.1β = 90
c = 171.67γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMULTILAYER2015-02-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I911-30.97898MAX III911-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1361.4998.10.0736.628122459.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.132.2599.40.40521.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.1361.0177139408098.050.177340.175170.21742RANDOM33.732
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.420.210.42-1.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.105
r_dihedral_angle_2_deg14.998
r_long_range_B_refined8.677
r_long_range_B_other8.637
r_dihedral_angle_1_deg7.142
r_scangle_other5.689
r_mcangle_it5.11
r_mcangle_other5.11
r_scbond_it3.686
r_scbond_other3.686
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.105
r_dihedral_angle_2_deg14.998
r_long_range_B_refined8.677
r_long_range_B_other8.637
r_dihedral_angle_1_deg7.142
r_scangle_other5.689
r_mcangle_it5.11
r_mcangle_other5.11
r_scbond_it3.686
r_scbond_other3.686
r_mcbond_it3.246
r_mcbond_other3.246
r_angle_refined_deg1.653
r_angle_other_deg0.519
r_chiral_restr0.067
r_bond_refined_d0.01
r_bond_other_d0.009
r_gen_planes_refined0.007
r_gen_planes_other0.001
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7696
Nucleic Acid Atoms
Solvent Atoms699
Heterogen Atoms124

Software

Software
Software NamePurpose
REFMACrefinement
SCALAdata scaling